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Mycoplana subbaraonis

Citation

Formal styling
Mycoplana subbaraonis (ex Ramana et al., 2013) Hördt et al., 2020 (priority 2025)
Effective publication
Hördt et al., 2020
Original (not valid) publication
Ramana et al., 2013
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:igm2z748 (validated)
Canonical URL
https://seqco.de/i:50861 Copy

Nomenclature

Rank
Species
Syllabication
sub.ba.ra.o'nis
Etymology
N.L. gen. masc. n. subbaraonis, of Subba Rao, named after Professor N. S. Subba Rao, an eminent microbiologist who significantly contributed to the knowledge of Rhizobium biofertilizers in India
Nomenclatural type
NCBI Assembly: GCF_900220975.1
Reference strain
Strain sc|0039684: JC85 = DSM 24765 = KCTC 23614 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Forms yellow coloured colonies on nutrient agar. Cells are rod-shaped, 0.8–1.2 µm in diameter. Gram-stain-negative. Oxidase- and catalase-positive. Growth mode is chemoorganoheterotrophic (respiration/fermentation). Good growth occurs after 48 h of incubation on nutrient agar at 30 °C. Growth occurs between pH 6.0–7.5 (optimum 7.0). NaCl is not required and tolerated up to 3 % (w/v). Utilises a number of carbon sources for growth. Good carbon sources for growth are d-fructose, α-d-glucose, d-sorbitol, glycerol, malate, succinate and glutamate. Major fatty acid is C18 : 1ω7c with minor amounts of C19 : 0 cyclo ω8c, C16 : 0, C12 : 0 and C19 : 1ω7c/C19 : 1ω6c. Q-10 is the major quinone.

The type strain is JC85T ( = DSM 24765T = KCTC 23614T). The type strain was isolated as an endolith from a beach sand sample collected from Diamond Harbour, Kolkata, West Bengal, India. The DNA G+C content of the type strain is 67.7 mol%.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Mycoplana » Mycoplana subbaraonis
Parent
Mycoplana gtdb
Alternative placements

Genomics

Accession
NCBI Assembly:GCF_900220975.1
Cultures
Strain sc|0039684
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
153.0 ×
Source
Other features
  • G+C Content: 63.07%
  • Coding Density: 87.7%
  • Codon Table: 11
  • N50: 280,913 bp
  • Contigs: 85
  • Largest Contig: 502,747 bp
  • Assembly Length: 6,576,489 bp
  • Ambiguous Assembly Fraction: 0.0089%
Automated checks
Complete
See additional details
Last modified about 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
4 months ago and claimed 2 months ago by Van Lill, Melandre
Submitted
2 months ago by Van Lill, Melandre
Curators
Validated
About 2 months ago by St. John, Emily
Date of priority
2025-06-10 03:03 PM (UTC)

Publications
2

Citation Title
Hördt et al., 2020, Frontiers in Microbiology Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
Effective publication
Ramana et al., 2013, International Journal of Systematic and Evolutionary Microbiology Rhizobium subbaraonis sp. nov., an endolithic bacterium isolated from beach sand
Original (not valid) publication


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seqco.de/r:igm2z748