Jordiarchaeum madagascariense^Ts

Citation

Formal styling

Jordiarchaeum madagascariense^Ts corrig. Sun et al., 2021 (valid 2025)

Effective publication

Sun et al., 2021

Corrigendum

In SeqCode Registry from “Jordarchaeum madagascariense” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:_bd4p149 (validated)

Canonical URL

https://seqco.de/i:631 CopyCopied to the clipboard

Nomenclature

Rank

Species

Syllabication

ma.da.ga.scar.i.en'se

Etymology

N.L. neut. adj. madagascariense, of or pertaining to Madagascar, an island country in the Indian Ocean

Nomenclatural type

NCBI Assembly: GCA_019056875.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Sun, et al (2021): This uncultured lineage is represented by the genome “EB_bin_7”, NCBI BioSample SAMN19461862, recovered from elephant bird fossils in Madagascar, with an estimated completeness of 95.02% and a contamination of 2.41%, the presence of a 23S, 16S and 5S rRNA gene and 16 tRNAs.

Classification

Archaea » Asgardarchaeota » Jordiarchaeia » Jordiarchaeales » Jordiarchaeaceae » Jordiarchaeum » Jordiarchaeum madagascariense^Ts

Parent

Jordiarchaeum gtdb

Pseudonyms

• Jordarchaeum madagascariense (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_019056875.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.02%
• Contamination: 2.41%
• Quality: 82.97

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 16 amino acids

Sequencing depth

95.0 ×

Source

• BioSample: SAMN19461862
• And 4 more…

Other features

• G+C Content: 41.0%
• Coding Density: 83.73%
• Codon Table: 11
• N50: 8,269 bp
• Contigs: 536
• Largest Contig: 34,298 bp
• Assembly Length: 3,677,642 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

 CheckM was then applied to calculate estimated completeness and contamination 

Automated checks

Complete

See additional details

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Last modified 5 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_019056875.1
• GTDB Tree: s__Jordarchaeum madagascariense
• Wikispecies: Jordiarchaeum madagascariense

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Rinke, Chris, created 11 months ago

Submitted by

Rinke, Chris 3 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 3 months ago

Date of priority

2025-01-27 10:16 AM (UTC)