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Candidatus Pandoraea novymonadis

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Citation

Formal styling
“Candidatus Pandoraea novymonadis” Kostygov et al., 2016
Effective publication
Kostygov et al., 2016
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:731

Nomenclature

Rank
Species
Syllabication
no.vy.mo.na'dis
Etymology
N.L. novymonadis, refers to the specific trypanosomatid host
Nomenclatural type
NCBI Assembly: GCA_003004665.1

Taxonomy

Description
Species diagnosis and description: Cells are Gram-negative, nonsporulating, rodlike in shape, measuring between 0.4 and 0.7 in length by 1.5 to 3.0 µm in width, fitting the genus description. They are cultivable axenically and motile. The species is identified by its unique position on the 16S rRNA-based phylogenetic tree.
Type host: Novymonas esmeraldas (Trypanosomatidae).
Type material: The name-bearing type, a hapantotype, is a Giemsa-stained slide of the axenic culture of “Ca. Pandoraea novymonadis,” deposited in the research collection of the Life Science Research Centre in Ostrava and the Institute of Parasitology, České Budějovice, Czech Republic (accession code 2015/E262AT.01/Pandoraea).
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Burkholderiaceae » Pandoraea » Candidatus Pandoraea novymonadis
Parent
Pandoraea gtdb

Genomics

Accession
NCBI Assembly:GCA_003004665.1
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.9%
  • Quality: 95.5
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Other features
  • G+C Content: 43.8%
  • Coding Density: 80.31%
  • Codon Table: 11
  • N50: 844,906 bp
  • Contigs: 6
  • Largest Contig: 844,906 bp
  • Assembly Length: 1,157,259 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 10 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Excubia bot over 3 years ago

Publications
3

Citation Title
Zakharova et al., 2021, mBio A New Model Trypanosomatid, Novymonas esmeraldas : Genomic Perception of Its “ Candidatus Pandoraea novymonadis” Endosymbiont
Kostygov et al., 2017, Frontiers in Microbiology Genome of Ca. Pandoraea novymonadis, an Endosymbiotic Bacterium of the Trypanosomatid Novymonas esmeraldas
Kostygov et al., 2016, mBio Novel Trypanosomatid-Bacterium Association: Evolution of Endosymbiosis in Action
Effective publication


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