Ali, Muhammad

A novel anaerobic ammonium-oxidizing (anammox) bacterium was detected in an upflow column reactor treating synthetic nitrogen-rich saline solution. Here, we assembled a 4.59-Mb draft genome sequence of this bacterium, identified as a member of the genus “ Candidatus Scalindua,” that has 84% nucleotide-level genomic similarity with the closest related anammox bacterium (“ Candidatus Scalindua rubra”).

ABSTRACT The anaerobic ammonium-oxidizing (anammox) bacterium “ Candidatus Brocadia sp. 40” demonstrated the fastest growth rate compared to others in this taxon. Here, we report the 2.93-Mb draft genome sequence of this bacterium, which has 2,565 gene-coding regions, 41 tRNAs, and a single rrn operon.

Summary Although metabolic pathways and associated enzymes of anaerobic ammonium oxidation (anammox) of ‘ Ca . Kuenenia stuttgartiensis’ have been studied, those of other anammox bacteria are still poorly understood. reduction to NO is considered to be the first step in the anammox metabolism of ‘ Ca . K. stuttgartiensis’, however, ‘ Ca . Brocadia’ lacks the genes that encode canonical NO‐forming nitrite reductases (NirS or NirK) in its genome, which is different from ‘ Ca . K. stuttgartiensis’. Here, we studied the anammox metabolism of ‘ Ca . Brocadia sinica’. 15 N‐tracer experiments demonstrated that ‘ Ca . B. sinica’ cells could reduce to NH 2 OH, instead of NO, with as yet unidentified nitrite reductase(s). Furthermore, N 2 H 4 synthesis, downstream reaction of reduction, was investigated using a purified ‘ Ca . B. sinica' hydrazine synthase (Hzs) and intact cells. Both the ‘ Ca . B. sinica’ Hzs and cells utilized NH 2 OH and , but not NO and , for N 2 H 4 synthesis and further oxidized N 2 H 4 to N 2 gas. Taken together, the metabolic pathway of ‘ Ca . B. sinica’ is NH 2 OH‐dependent and different from the one of ‘ Ca . K. stuttgartiensis’, indicating metabolic diversity of anammox bacteria.

Summary To date, six candidate genera of anaerobic ammonium‐oxidizing (anammox) bacteria have been identified, and numerous studies have been conducted to understand their ecophysiology. In this study, we examined the physiological characteristics of an anammox bacterium in the genus ‘ C andidatus   J ettenia’. Planctomycete KSU ‐1 was found to be a mesophilic (20–42.5°C) and neutrophilic ( pH 6.5–8.5) bacterium with a maximum growth rate of 0.0020 h −1 . Planctomycete KSU ‐1 cells showed typical physiological and structural features of anammox bacteria; i.e. 29 N 2 gas production by coupling of 15 NH 4 + and 14 NO 2 − , accumulation of hydrazine with the consumption of hydroxylamine and the presence of anammoxosome. In addition, the cells were capable of respiratory ammonification with oxidation of acetate. Notably, the cells contained menaquinone‐7 as a dominant respiratory quinone. Proteomic analysis was performed to examine underlying core metabolisms, and high expressions of hydrazine synthase, hydrazine dehydrogenase, hydroxylamine dehydrogenase, nitrite/nitrate oxidoreductase and carbon monoxide dehydrogenase/acetyl‐ CoA synthase were detected. These proteins require iron or copper as a metal cofactor, and both were dominant in planctomycete KSU ‐1 cells. On the basis of these experimental results, we proposed the name ‘ C a . J ettenia caeni’ sp. nov. for the bacterial clade of the planctomycete KSU ‐1.