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Authors Krukenberg

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Krukenberg, Viola


Publications
5

CitationNamesAbstract
Cultivation and visualization of a methanogen of the phylum Thermoproteota Kohtz et al. (2024). Nature 632 (8027) Methanosuratincola verstraetei
Methyl-reducing methanogenesis by a thermophilic culture of Korarchaeia Krukenberg et al. (2024). Nature 632 (8027) “Methanodesulfokores washburnensis” “Methanodesulfokora washburnensis subsp. LCB3”
Culexarchaeia, a novel archaeal class of anaerobic generalists inhabiting geothermal environments Kohtz et al. (2022). “Culexarchaeia”
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Thermophilic archaea activate butane via alkyl-coenzyme M formation Laso-Pérez et al. (2016). Nature 539 (7629) “Syntropharchaeum caldarium” “Syntropharchaeum butanivorans” “Syntropharchaeum”
Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate‐reducing bacterium involved in the thermophilic anaerobic oxidation of methane Krukenberg et al. (2016). Environmental Microbiology 18 (9) “Desulfofervidus auxilii” Ca. Desulfofervidus Ca. Desulfofervidaceae “Desulfofervidales”
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Culexarchaeia, a novel archaeal class of anaerobic generalists inhabiting geothermal environments
AbstractGeothermal environments, including terrestrial hot springs and deep-sea hydrothermal sediments, often contain many poorly understood lineages of archaea. Here, we recovered ten metagenome-assembled genomes (MAGs) from geothermal sediments and propose that they constitute a new archaeal class within the TACK superphylum, “Candidatus Culexarchaeia”, named after the Culex Basin in Yellowstone National Park. Culexarchaeia harbor distinct sets of proteins involved in key cellular processes that are either phylogenetically divergent or are absent from other closely related TACK lineages, with a particular divergence in cell division and cytoskeletal proteins. Metabolic reconstruction revealed that Culexarchaeia have the capacity to metabolize a wide variety of organic and inorganic substrates. Notably, Culexarchaeia encode a unique modular, membrane associated, and energy conserving [NiFe]-hydrogenase complex that potentially interacts with heterodisulfide reductase (Hdr) subunits. Comparison of this [NiFe]-hydrogenase complex with similar complexes from other archaea suggests that interactions between membrane associated [NiFe]-hydrogenases and Hdr may be more widespread than previously appreciated in both methanogenic and non-methanogenic lifestyles. The analysis of Culexarchaeia further expands our understanding of the phylogenetic and functional diversity of lineages within the TACK superphylum and the ecology, physiology, and evolution of these organisms in extreme environments.
Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate‐reducing bacterium involved in the thermophilic anaerobic oxidation of methane
Summary The anaerobic oxidation of methane (AOM) is mediated by consortia of anaerobic methane‐oxidizing archaea (ANME) and their specific partner bacteria. In thermophilic AOM consortia enriched from Guaymas Basin, members of the ANME‐1 clade are associated with bacteria of the HotSeep‐1 cluster, which likely perform direct electron exchange via nanowires. The partner bacterium was enriched with hydrogen as sole electron donor and sulfate as electron acceptor. Based on phylogenetic, genomic and metabolic characteristics we propose to name this chemolithoautotrophic sulfate reducer Candidatus Desulfofervidus auxilii. Ca . D. auxilii grows on hydrogen at temperatures between 50°C and 70°C with an activity optimum at 60°C and doubling time of 4–6 days. Its genome draft encodes for canonical sulfate reduction, periplasmic and soluble hydrogenases and autotrophic carbon fixation via the reductive tricarboxylic acid cycle. The presence of genes for pili formation and cytochromes, and their similarity to genes of Geobacter spp., indicate a potential for syntrophic growth via direct interspecies electron transfer when the organism grows in consortia with ANME. This first ANME‐free enrichment of an AOM partner bacterium and its characterization opens the perspective for a deeper understanding of syntrophy in anaerobic methane oxidation.
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