BioSample Accession(s)

SAMEA6947919, ERS4657800

geographic location (depth)

5.1

assembly software

megahit

environment (material)

water

sulfate

0.16

total phosphorus

2.48597506495982

ferric iron

0.2

collection date

2014-09-05

ferrous iron

12.7

sample derived from

ERS4600323

geographic location (longitude)

25.11388888888889

metagenomic OTU

anoxic_mOTU_1100

binning parameters

min_len:1500,min_bin_size:10000,maxP:93,minS:50

contamination score

2.15

gtdb_taxonomy

d__Bacteria;p__Omnitrophota;c__Omnitrophia;o__Omnitrophales;f__UBA2337;g__XYB12-FULL-50-7

water environmental package

water

sample owner

Leyden Fernandez

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

completeness software

checkm

temperature

4.8

collection data

metagenome

environment (biome)

lentic water body

oxygen

0.57

environment (feature)

lake

organic carbon

1290.51595660536

geographic location (country and/or sea)

Finland

ENA-CHECKLIST

ERC000047

binning software

metabat

organism

Candidatus Omnitrophica bacterium

assembly quality

Many fragments with little to no review of assembly other than reporting of standard assembly statistics

nitrogen

159.923465198798

taxonomic identity marker

gtdbtk followed by sourmash-lca, see publication

completeness score

92.2

dissolved carbon dioxide

1245.1

geographic location (latitude)

61.20805555555556

scientific_name

Candidatus Omnitrophica bacterium

common name

investigation type

metagenome

metagenomic source

lake water metagenome

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

960.4

ph

6

iron

12.9

region

Evo

isolation_source

lake water

site name

Alinen Mustajärvi

BioSample Accession(s)

ERS4600323, SAMEA6872759

geographic location (depth)

5.1

environment (material)

water

sulfate

0.16

total phosphorus

2.48597506495982

ferric iron

0.2

collection date

2014-09-05

ferrous iron

12.7

geographic location (longitude)

25.11388888888889

water environmental package

water

sample owner

Leyden Fernandez

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

pH

6

temperature

4.8

collection data

metagenome

environment (biome)

lentic water body

Lake_code

AM

oxygen

0.57

environment (feature)

lake

organic carbon

1290.51595660536

geographic location (country and/or sea)

Finland

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

nitrogen

159.923465198798

Run

R2

dissolved carbon dioxide

1245.1

geographic location (latitude)

61.20805555555556

scientific_name

lake water metagenome

common name

investigation type

metagenome

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

960.4

iron

12.9

region

Evo

site name

Alinen Mustajärvi

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4154559" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_Alinen_Mustaj&#xE4;rvi_sample_AM-2014-D6" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4154559</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_Alinen_Mustaj&#xE4;rvi_sample_AM-2014-D6</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_Alinen_Mustaj&#xE4;rvi_sample_AM-2014-D6</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600323">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600323</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872759</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake Alinen Mustaj&#xE4;rvi sample AM-2014-D6</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600323</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2667803</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4154559&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4154559&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>