Aquincolibacterium aerophilumTs


Citation

Formal styling
Aquincolibacterium aerophilumTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23678

Nomenclature

Rank
Species
Syllabication
ae.ro'phi.lum
Etymology
Gr. masc. n. aer, air; N.L. masc. adj. suff. -philus, loving; N.L. neut. adj. aerophilum, air-loving
Nomenclatural type
NCBI Assembly: GCA_903884815.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type for the genus Aquincolibacterium. Estimated genome size of this species is 2.7 to 3 Mb. %GC content range between 52.58 to 53.08 %. Sugar and amino acid transport systems are encoded by genomes belonging to this species, and genes associated with Embden-Meyerhof glycolysis and the TCA cycle are present, although succinate dehydrogenase are absent from genomes. For respiration, a simplified system consisting of complex I, ubiquinone, and cytochrome bd ubiquinol is feasible, and would suggest a microaerophilic lifestyle. Genomes encode a cytoplasmic group A3 [FeFe] electron bifurcating hydrogenase and conductive pili, all genes analyzed for the production of a Type-4a pilus, as well as a respiratory F-type ATPase. Acetate utilization or acetogenesis may be possible as a reversible acetyl-CoA synthetase is present in this species, which, coupled with the Group A3 [FeFe] hydrogenase may produce acetate. Very large ORFs or partial homologs to very large ORFs are encoded by this species. All assemblies originated from water from the methane-rich boreal lake Lake Alinen-Mustajärvi, Finland. The nomenclatural type for the species is the genome GCA_903884815.1.
Classification
Bacteria » Omnitrophota » Omnitrophia » Omnitrophales » Aquincolibacteriaceae » Aquincolibacterium » Aquincolibacterium aerophilumTs
Parent
Aquincolibacterium gtdb

Genomics

Accession
NCBI Assembly:GCA_903884815.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.02%
  • Contamination: 0.62%
  • Quality: 93.92
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 52.72%
  • Coding Density: 92.21%
  • Codon Table: 11
  • N50: 62,682 bp
  • Contigs: 80
  • Largest Contig: 184,991 bp
  • Assembly Length: 2,871,782 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v.2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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