Aquincolibacterium lacustre


Citation

Formal styling
Aquincolibacterium lacustre Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23675

Nomenclature

Rank
Species
Syllabication
la.cus'tre
Etymology
N.L. neut. adj. lacustre, belonging to the lake
Nomenclatural type
NCBI Assembly: GCA_903856085.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Estimated genome sizes for the species are 2.27-2.36 Mb, with %GC content of 50.32-50.59 %. Sugar and amino acid transporters are encoded by genomes in this species. Only respiratory complexes I and V are encoded by genomes of the species, and no terminal electron acceptors can confidently be identified. A cytoplasmic group A3 [FeFe] electron bifurcating hydrogenase is encoded by genomes of the species. Due to the incompleteness of respiratory pathways in this species and no terminal electron acceptors being predicted from the genomes, a reversible acetyl-CoA synthetase encoded by genomes of this species coupled with the Group A3 [FeFe] hydrogenase may be indicative of acetogenesis in this species. Respiratory complex I may be providing oxidized NAD+ and maintain a proton gradient across the membrane, while the respiratory F-type ATPase (complex V) produces ATP. Genes for the production of a Type-4a pilus is also present, as well as the "symbiotic" F-type ATPase. Very large ORFs are encoded by members of this species. The nomenclatural type for the species is the genome GCA_903856085.1.
Classification
Bacteria » Omnitrophota » Omnitrophia » Omnitrophales » Aquincolibacteriaceae » Aquincolibacterium » Aquincolibacterium lacustre
Parent
Aquincolibacterium gtdb

Genomics

Accession
NCBI Assembly:GCA_903856085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.39%
  • Contamination: 0.65%
  • Quality: 94.14
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 30.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 50.59%
  • Coding Density: 92.47%
  • Codon Table: 11
  • N50: 86,684 bp
  • Contigs: 50
  • Largest Contig: 368,178 bp
  • Assembly Length: 2,360,721 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v.2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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