BioSample Accession(s)

SAMEA6945319, ERS4655204

geographic location (depth)

5.5

assembly software

megahit

environment (material)

water

sulfate

0.317

collection date

2018-08-22

sample derived from

ERS4600345

ammonium

152.72465214258

geographic location (longitude)

25.11388888888889

metagenomic OTU

anoxic_mOTU_0021

binning parameters

min_len:1500,min_bin_size:10000,maxP:93,minS:50

contamination score

1.61

nitrate

1.00637207704552

gtdb_taxonomy

d__Bacteria;p__Omnitrophota;c__Omnitrophia;o__Omnitrophales;f__UBA2337;g__XYB12-FULL-50-7

water environmental package

water

sample owner

"Sari Peura

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

completeness software

checkm

temperature

4.6

collection data

metagenome

environment (biome)

lentic water body

oxygen

0.3

environment (feature)

lake

organic carbon

1998.21825538895

geographic location (country and/or sea)

Finland

ENA-CHECKLIST

ERC000047

binning software

metabat

organism

Candidatus Omnitrophica bacterium

assembly quality

Many fragments with little to no review of assembly other than reporting of standard assembly statistics

nitrogen

249.166470332055

phosphate

0.052331544022727

taxonomic identity marker

gtdbtk followed by sourmash-lca, see publication

completeness score

91.4

dissolved carbon dioxide

331.6024086

geographic location (latitude)

61.20805555555556

scientific_name

Candidatus Omnitrophica bacterium

common name

investigation type

metagenome

nitrite

0.032274856845393

metagenomic source

lake water metagenome

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

387.1197306

region

Evo

dissolved organic carbon

1840.02597683732

isolation_source

lake water

site name

Alinen Mustajärvi

BioSample Accession(s)

ERS4600345, SAMEA6872781

geographic location (depth)

5.5

environment (material)

water

sulfate

0.317

collection date

2018-08-22

ammonium

152.72465214258

geographic location (longitude)

25.11388888888889

nitrate

1.00637207704552

water environmental package

water

sample owner

"Sari Peura

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

temperature

4.6

collection data

metagenome

environment (biome)

lentic water body

Lake_code

AM

oxygen

0.3

environment (feature)

lake

organic carbon

1998.21825538895

geographic location (country and/or sea)

Finland

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

nitrogen

249.166470332055

phosphate

0.052331544022727

Run

R2

dissolved carbon dioxide

331.6024086

geographic location (latitude)

61.20805555555556

scientific_name

lake water metagenome

common name

investigation type

metagenome

nitrite

0.032274856845393

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

387.1197306

region

Evo

dissolved organic carbon

1840.02597683732

site name

Alinen Mustajärvi

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4154813" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_Alinen_Mustaj&#xE4;rvi_sample_AM-lipid-02-D9" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4154813</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_Alinen_Mustaj&#xE4;rvi_sample_AM-lipid-02-D9</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_Alinen_Mustaj&#xE4;rvi_sample_AM-lipid-02-D9</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600345">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600345</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872781</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake Alinen Mustaj&#xE4;rvi sample AM-lipid-02-D9</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600345</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2667834</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4154813&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4154813&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>