BioSample Accession(s)

SAMEA6947271, ERS4657153

geographic location (depth)

2.8

assembly software

megahit

environment (material)

water

sulfate

1.6

total phosphorus

2.61511662677591

ferric iron

0.7

collection date

2014-09-05

ferrous iron

48

sample derived from

ERS4600509

geographic location (longitude)

25.142222222222223

metagenomic OTU

anoxic_mOTU_0123

binning parameters

min_len:1500,min_bin_size:10000,maxP:93,minS:50

contamination score

2.25

gtdb_taxonomy

d__Bacteria;p__Omnitrophota;c__koll11;o__UBA10015;f__GCA-002753745;g__GCA-2753465

water environmental package

water

sample owner

Leyden Fernandez

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

completeness software

checkm

temperature

5.8

collection data

metagenome

environment (biome)

lentic water body

oxygen

0.5

environment (feature)

lake

organic carbon

1923.28507081186

geographic location (country and/or sea)

Finland

ENA-CHECKLIST

ERC000047

binning software

metabat

organism

Candidatus Omnitrophica bacterium

assembly quality

Many fragments with little to no review of assembly other than reporting of standard assembly statistics

nitrogen

107.805550200975

taxonomic identity marker

gtdbtk followed by sourmash-lca, see publication

completeness score

92.65

dissolved carbon dioxide

1584.2

geographic location (latitude)

61.23083333333334

scientific_name

Candidatus Omnitrophica bacterium

common name

investigation type

metagenome

metagenomic source

lake water metagenome

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

584

ph

6.02

iron

48.7

region

Evo

isolation_source

lake water

site name

Mekkojärvi

BioSample Accession(s)

ERS4600509, SAMEA6872945

geographic location (depth)

2.8

environment (material)

water

sulfate

1.6

total phosphorus

2.61511662677591

ferric iron

0.7

collection date

2014-09-05

ferrous iron

48

geographic location (longitude)

25.142222222222223

water environmental package

water

sample owner

Leyden Fernandez

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

pH

6.02

temperature

5.8

collection data

metagenome

environment (biome)

lentic water body

Lake_code

MJ

oxygen

0.5

environment (feature)

lake

organic carbon

1923.28507081186

geographic location (country and/or sea)

Finland

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

nitrogen

107.805550200975

Run

R2

dissolved carbon dioxide

1584.2

geographic location (latitude)

61.23083333333334

scientific_name

lake water metagenome

common name

investigation type

metagenome

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

584

iron

48.7

region

Evo

site name

Mekkojärvi

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4156246" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_Mekkoj&#xE4;rvi_sample_MJ-2014-D6" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4156246</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_Mekkoj&#xE4;rvi_sample_MJ-2014-D6</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_Mekkoj&#xE4;rvi_sample_MJ-2014-D6</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600509">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600509</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872945</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake Mekkoj&#xE4;rvi sample MJ-2014-D6</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600509</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2668248</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156246&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156246&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>