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Fredricksoniimonas borealis

Citation

Formal styling
Fredricksoniimonas borealis Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23756

Nomenclature

Rank
Species
Syllabication
bo.re.a'lis
Etymology
L. fem. adj. borealis, pertaining to the North, boreal
Nomenclatural type
NCBI Assembly: GCA_903901225.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
In addition to characteristics provided for the genus, the estimated genome size for members of this species is 2.2-2.4 Mb with a GC content of 54.57-55.10 %. Genes associated with respiratory complexes, specifically complex I, II, III and V, and cytochrome bd ubiquinol are encoded by genomes of this species. A Group A3 [FeFe] hydrogenase is encoded by this species. A reversible acetyl-CoA synthetase may be indicative of acetate utilization, and/or acetogenesis coupled with the Group A3 [FeFe] hydrogenase. All genes required for the production of a Type-4a pilus and the tight-adherence complex are encoded by the genomes of the species, as well as very large ORFs. All assemblies originate from methane-rich freshwater lakes in Finland. The type for the species is the genome GCA_903901225.1.
Classification
Bacteria » Omnitrophota » “Velamenicoccia” » “Zapsychrales” » Fredricksoniimonadaceae » Fredricksoniimonas » Fredricksoniimonas borealis
Parent
Fredricksoniimonas gtdb

Genomics

Accession
NCBI Assembly:GCA_903901225.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.54%
  • Contamination: 0.55%
  • Quality: 93.79
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 54.59%
  • Coding Density: 93.79%
  • Codon Table: 11
  • N50: 69,321 bp
  • Contigs: 49
  • Largest Contig: 201,535 bp
  • Assembly Length: 2,378,232 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication


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