Fredricksoniimonas aquilentivivensTs


Citation

Formal styling
Fredricksoniimonas aquilentivivensTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23752

Nomenclature

Rank
Species
Syllabication
a.qui.len.ti.vi'vens
Etymology
L. fem. n. aqua, water; L. masc. adj. lentus, slow; L. pres. part. vivens, living; N.L. part. adj. aquilentivivens, living in slow water
Nomenclatural type
NCBI Assembly: GCA_903860135.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the type for the genus Fredricksoniimonas. In addition to genus characteristics, the estimated genome size for this species is 2 Mb. The %GC for the genome is 50.78 %. Coupled with a Group A3 [FeFe] hydrogenase encoded by the genome of this species, a reversible acetyl-CoA synthetase indicates likely acetogenesis in this species, through the production of acetate from acetyl-CoA by the fermentation of glucose and nucleotides. Respiratory complex I is present in the genome of this species, and can provide oxidized NAD+ and maintain a proton gradient across the membrane. A respiratory F-type ATPase (complex V) is also present in the genome, and can produce ATP. A metal-reducing cytochrome is present in the genome. Additionally, a "symbiotic" F-type ATPase is also encoded by this genome, along with all genes required for the tight-adherence complex and a Type-4a pilus. A very large ORF is also encoded by this genome. The assembly was recovered from a metagenomic sample of lake water from Nästjärnen, Sweden. The nomenclatural type for the species is the genome GCA_903860135.1.
Classification
Bacteria » Omnitrophota » “Velamenicoccia” » “Zapsychrales” » Fredricksoniimonadaceae » Fredricksoniimonas » Fredricksoniimonas aquilentivivensTs
Parent
Fredricksoniimonas gtdb

Genomics

Accession
NCBI Assembly:GCA_903860135.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.09%
  • Contamination: 1.51%
  • Quality: 89.54
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 50.78%
  • Coding Density: 93.76%
  • Codon Table: 11
  • N50: 197,393 bp
  • Contigs: 20
  • Largest Contig: 343,315 bp
  • Assembly Length: 2,026,200 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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