SeqCode Registry
cognitis nomina
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Genomes
sc|0000145
JSON
Genome sc|0000145
Name
Palauibacter denitrificans
Database
NCBI Assembly
Accession
GCA_009841015.1
Genomics
Accession
NCBI Assembly:
GCA_009841015.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.54%
Contamination:
3.3%
Quality:
79.04
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 17 amino acids
Source
BioSample: SRS5161478
Other features
G+C Content:
69.1%
Coding Density:
92.76%
Codon Table:
11
N50:
27,076 bp
Contigs:
219
Largest Contig:
77,618 bp
Assembly Length:
3,760,526 bp
Ambiguous Assembly Fraction:
0.01%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2016-10
Location
Lat Lon:
18.49 S 147.38 E
Toponym
Geo Loc Name:
Australia: Great Barrier Reef
Environment
Isolation Source:
Sponge tissue
Other
Host:
Ircinia ramosa
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SRS5161478
: Metagenome or environmental sample from sponge metagenome
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS5161478
×
INSDC secondary accession
SRS5161478
NCBI submission package
Metagenome.environmental.1.0
lat lon
18.49 S 147.38 E
organism
sponge metagenome
collection date
2016-10
isolation source
Sponge tissue
geo loc name
Australia: Great Barrier Reef
host
Ircinia ramosa
sample description
SB0661_IR1_T0_deep
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2020-01-10
ENA-LAST-UPDATE
2021-02-28
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