Genome sc|0000145


Database

NCBI Assembly

Accession

GCA_009841015.1

Genomics

Accession
NCBI Assembly:GCA_009841015.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.54%
  • Contamination: 3.3%
  • Quality: 79.04
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Source
Other features
  • G+C Content: 69.1%
  • Coding Density: 92.76%
  • Codon Table: 11
  • N50: 27,076 bp
  • Contigs: 219
  • Largest Contig: 77,618 bp
  • Assembly Length: 3,760,526 bp
  • Ambiguous Assembly Fraction: 0.01%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-10
Location
Lat Lon: 18.49 S 147.38 E
Toponym
Geo Loc Name: Australia: Great Barrier Reef
Environment
Isolation Source: Sponge tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

SB0661_IR1_T0_deep


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