Palauibacter irciniicola

Citation

Formal styling

Palauibacter irciniicola Aldeguer-Riquelme et al., 2023

Effective publication

Aldeguer-Riquelme et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Canonical URL

https://seqco.de/i:23792

Nomenclature

Rank

Species

Syllabication

ir.ci.ni.i'co.la

Etymology

N.L. fem. n. Ircinia, name of the sponge genus; L. masc. or fem. n. suff. -cola, inhabitant; L. masc. n. irciniicola, inhabitant of Ircinia

Nomenclatural type

NCBI Assembly: GCA_009836005.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter irciniicola

Parent

Palauibacter gtdb

Genomics

Accession

NCBI Assembly:GCA_009836005.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.6%
• Contamination: 3.3%
• Quality: 79.1

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 63.0%)
• tRNAs for 19 amino acids

Source

• BioSample: SAMN12347681

Other features

• G+C Content: 69.44%
• Coding Density: 93.55%
• Codon Table: 11
• N50: 55,937 bp
• Contigs: 114
• Largest Contig: 158,930 bp
• Assembly Length: 3,599,158 bp
• Ambiguous Assembly Fraction: 0.0072%

Submitter comments

Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan

Automated checks

Complete

See additional details

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Last modified 4 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_009836005.1
• GTDB Tree: s__Palauibacter irciniicola
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Palauibacter irciniicola (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Aldeguer-Riquelme, Borja about 2 years ago

Submitted by

Aldeguer-Riquelme, Borja almost 2 years ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Chuvochina, Maria over 1 year ago

Date of priority

2023-06-23 07:38 AM (UTC)