SeqCode Registry
cognitis nomina
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Genomes
sc|0001458
JSON
Genome sc|0001458
Name
Enterococcus leclercqii
Database
NCBI Assembly
Accession
GCA_009933135.1
Genomics
Accession
NCBI Assembly:
GCA_009933135.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
3.8%
Quality:
81.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
200.0 ×
Source
BioSample: SAMN05199421
Other features
G+C Content:
43.77%
Coding Density:
83.64%
Codon Table:
11
N50:
215,275 bp
Contigs:
22
Largest Contig:
699,534 bp
Assembly Length:
3,181,050 bp
Ambiguous Assembly Fraction:
0.013%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2015-05
Location
Not detected
Toponym
Geo Loc Name:
USA: South Carolina
Environment
Sample Type:
Whole organism
Other
Host:
Gallus gallus domesticus
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN05199421
: Microbe sample from Enterococcus sp. CU9D
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN05199421
×
strain
CU9D
NCBI submission package
Microbe.1.0
organism
Enterococcus sp. CU9D
collection date
2015-05
geo loc name
USA: South Carolina
host
Gallus gallus domesticus
sample type
Whole organism
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-01-01
ENA-LAST-UPDATE
2021-02-28
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