SeqCode Registry
cognitis nomina
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Genomes
sc|0001464
JSON
Genome sc|0001464
Name
Enterococcus ikei
Database
NCBI Assembly
Accession
GCA_017316105.1
Genomics
Accession
NCBI Assembly:
GCA_017316105.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
2.8%
Quality:
86.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 18 amino acids
Sequencing depth
135.0 ×
Source
BioSample: SAMN18075568
Other features
G+C Content:
35.6%
Coding Density:
86.39%
Codon Table:
11
N50:
97,200 bp
Contigs:
74
Largest Contig:
288,914 bp
Assembly Length:
3,546,883 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
10 days ago
Sample Metadata
BioSample entries
BioSample: SAMN18075568
Date
Collection Date:
2016-06
Location
Not detected
Toponym
Geo Loc Name:
USA
Environment
Sample Type:
isolate
Isolation Source:
Whole tissue homogenate
Other
Host:
moth
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN18075568
: Ente_spec_DIV0869a_V1
Metadata retrieved
10 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN18075568
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN18075568
strain
DIV0869a
collection_date
2016-06
NCBI submission package
Microbe.1.0
organism
Enterococcus sp. DIV0869a
host
moth
geo_loc_name
USA
isolate_name_alias
DIV0869a_V1
sample_type
isolate
isolation_source
Whole tissue homogenate
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2021-02-26
ENA-LAST-UPDATE
2021-03-05
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