Keywords: GSC:MIxS;MIGS:6.0

strain

VK9D

collection_date

2013

isol_growth_condt

https://doi.org/10.3389/fmicb.2019.01195

ref_biomaterial

Unpublished

INSDC secondary accession

SRS19046907

organism

Mesorhizobium sp. VK9D

env_broad_scale

Soil

env_local_scale

Root nodule

NCBI submission package

MIGS.ba.plant-associated.6.0

host

Vachellia karroo

num_replicons

1

geo_loc_name

South Africa: Stutterheim, Eastern Cape

env_medium

Root nodule

lat_lon

32.5699 S 27.4269 E

isolation_source

root nodules

BioSampleModel

MIGS/MIMS/MIMARKS.plant-associated

ENA-FIRST-PUBLIC

2023-11-20

ENA-LAST-UPDATE

2023-11-20

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX21970993" alias="Mesorhizobium australafricanum sp. nov. VK9D" center_name="SUB13795282" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX21970993</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13795282">Mesorhizobium australafricanum sp. nov. VK9D</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Whole genome sequencing of Mesorhizobium strain isolated from Vachellia karroo root nodules.</TITLE>
  <STUDY_REF accession="SRP464242">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP464242</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1009259</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Library preparation was done using the NEBNext UltraTM II FS DNA Library Prep Kit for Illumina.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS19046907">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS19046907</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN37150256</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Mesorhizobium australafricanum sp. nov. VK9D</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>Restriction Digest</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS19046907</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1724747</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX21970993&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX21970993&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>