Genome sc|0001559

Genomics

Accession

NCBI Assembly:GCA_016716065.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.27%
• Contamination: 3.82%
• Quality: 78.17

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

9.0 ×

Source

• BioSample: SAMN16426181
• BioSample: SAMN14825705

Other features

• G+C Content: 57.32%
• Coding Density: 87.45%
• Codon Table: 11
• N50: 459,667 bp
• Contigs: 29
• Largest Contig: 1,054,204 bp
• Assembly Length: 6,811,151 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-09-03

Location

Lat Lon: 55.668006 N 11.107247 E

Toponym

Geo Loc Name: Denmark: Kalundborg

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Kalu_18-Q3-R12-55 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.6.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16426181: MIMAG Metagenome-assembled Genome sample from Chloroflexota bacterium
• SAMN14825705: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved 5 months ago