Genome sc|0001587

Genomics

Accession

INSDC Nucleotide:SHNN00000000.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 96.91%
• Contamination: 1.52%
• Quality: 89.31

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

260.4 ×

Source

• BioSample: SAMN10929371

Other features

• G+C Content: 54.2%
• Coding Density: 91.48%
• Codon Table: 11
• N50: 1,315,042 bp
• Contigs: 20
• Largest Contig: 1,895,525 bp
• Assembly Length: 4,835,928 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN10929371

Date

Collection Date: 2010-08-31

Location

Lat Lon: 38.23 N 128.69 E

Toponym

Geo Loc Name: South Korea

Environment

Env Broad Scale: mairne coastal biomes

Env Local Scale: surface layer

Env Medium: seawater

Other

Depth: 10 m

Isol Growth Condt: cultivation in low-nutrient heterotrophic medium (LNHM) at 18 degC

Package

Ncbi Submission Package: MIGS.ba.water.6.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMN10929371: MIGS Cultured Bacterial/Archaeal sample from Candidatus Litorirhabdus singularis

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Metadata retrieved about 1 month ago