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Litorirhabdus singularisTs

This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Missing source data: The raw sequencing data should be available in INSDC databases (e.g., Sequence Read Archive)

Citation

Formal styling
Litorirhabdus singularisTs Li et al., 2023 (priority 2024)
Effective publication
Li et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ur0fqscc (validated)
Canonical URL
https://seqco.de/i:44049

Nomenclature

Rank
Species
Syllabication
sin.gu.la'ris
Etymology
L. fem. adj. singularis, alone, singular, referring to the fact that this is a free-living member
Nomenclatural type
INSDC Nucleotide: SHNN00000000.1
Reference strain
Strain sc|0038723: IMCC14734 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species is established on the basis of taxonomic novelty analysis, and the type material is the genome IMCC14734.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Cellvibrionales » Halieaceae » Litorirhabdus » Litorirhabdus singularisTs
Parent
Litorirhabdus gtdb

Genomics

Accession
INSDC Nucleotide:SHNN00000000.1
Cultures
Strain sc|0038723
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.91%
  • Contamination: 1.52%
  • Quality: 89.31
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
260.4 ×
Source
Other features
  • G+C Content: 54.2%
  • Coding Density: 91.48%
  • Codon Table: 11
  • N50: 1,315,042 bp
  • Contigs: 20
  • Largest Contig: 1,895,525 bp
  • Assembly Length: 4,835,928 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 8 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Li, Shanhui
Submitted
Over 2 years ago by Li, Shanhui
Curators
Validated
Over 2 years ago by Palmer, Marike
Date of priority
2024-03-15 09:07 PM (UTC)

Publications
1

Citation Title
Li et al., 2023, Microbiology Spectrum Metabolic Versatility of the FamilyHalieaceaeRevealed by the Genomics of Novel Cultured Isolates
Effective publication


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