SeqCode Registry
cognitis nomina
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Genomes
sc|0002360
JSON
Genome sc|0002360
Name
Nitrosomaritimum aestuarii
Ts
Database
NCBI Assembly
Accession
GCA_013867335.1
Genomics
Accession
NCBI Assembly:
GCA_013867335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.63%
Contamination:
0.97%
Quality:
90.78
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
4 23S rRNAs (up to 42.0%)
tRNAs for 18 amino acids
Sequencing depth
10.0 ×
Source
BioSample: SAMN14996549
BioSample: SAMN13404416
Other features
G+C Content:
34.88%
Coding Density:
89.7%
Codon Table:
11
N50:
15,420 bp
Contigs:
184
Largest Contig:
52,801 bp
Assembly Length:
1,460,734 bp
Ambiguous Assembly Fraction:
0.097%
Submitter comments
CheckM
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2018-12-14
Location
Lat Lon:
24.39 N 117.92 E
Toponym
Geo Loc Name:
China: Jiulong River estuary
Environment
Sample Type:
metagenomic assembly
Isolation Source:
estuarine sediment • estuary sediment
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
•
Metagenome.environmental.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
SAMN14996549
: AOA MAGs in the Jiulong River estuary
SAMN13404416
: Metagenome or environmental sample from estuary metagenome
Metadata retrieved
about 1 month ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN14996549
×
collection_date
2018-12-14
isolate
S2bin1
NCBI submission package
Microbe.1.0
organism
Nitrosopumilaceae archaeon
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the estuary metagenome BioSample: SAMN13404416
geo_loc_name
China: Jiulong River estuary
lat_lon
24.39 N 117.92 E
environmental-sample
1
isolation_source
estuarine sediment
metagenome-source
estuary metagenome
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-06-01
ENA-LAST-UPDATE
2021-02-28
SAMN13404416
×
collection_date
2018-12-14
NCBI submission package
Metagenome.environmental.1.0
organism
estuary metagenome
geo_loc_name
China: Jiulong River estuary
lat_lon
24.39 N 117.92 E
isolation_source
estuary sediment
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2020-12-01
ENA-LAST-UPDATE
2021-02-28
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