Genome sc|0000261


Database

NCBI Assembly

Accession

GCA_947581785.1

Genomics

Accession
NCBI Assembly:GCA_947581785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.41%
  • Contamination: 3.3%
  • Quality: 76.91
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.94%
  • Coding Density: 93.52%
  • Codon Table: 11
  • N50: 85,903 bp
  • Contigs: 52
  • Largest Contig: 340,132 bp
  • Assembly Length: 3,197,555 bp
  • Ambiguous Assembly Fraction: 0.00069%
Submitter comments
Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA  
Automated checks
Complete

Last modified 9 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-12-22
Location
Lat Lon: 18.832467 S 147.633250 E
Toponym
Geo Loc Name: Australia: Davies Reef
Environment
Isolation Source: marine sponge reef biome
Env Broad Scale: coral reef
Env Local Scale: marine sponge reef biome
Env Medium: Tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: MIMS.me.host-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved 9 days ago

Sequencing Experiments

SRR10996928


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