Genome sc|0000269

Typification

Nomenclatural type of:

• Methanomethylicus mesodigestus^Ts

Genomics

Accession

NCBI Assembly:GCA_001717005.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.3%
• Contamination: 0.9%
• Quality: 85.8

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

5.0 ×

Source

• BioSample: SAMN04994458
• BioSample: SAMN05003748

Other features

• G+C Content: 58.1%
• Coding Density: 89.95%
• Codon Table: 11
• N50: 34,148 bp
• Contigs: 88
• Largest Contig: 122,250 bp
• Assembly Length: 1,428,061 bp
• Ambiguous Assembly Fraction: 1.0%

Automated checks

Complete

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Last modified 9 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN04994458
• BioSample: SAMN05003748

Date

Collection Date: 2012-10-31

Location

Lat Lon: 27° 28′ 12″ S, 153° 1′ 12″ E

View map of sampling locations

Toponym

Geo Loc Name: Australia: Brisbane

Environment

Env Material: sludge

Sample Type: metagenomic assembly

Env Biome: anaerobic

Isolation Source: Cellulose-degrading anaerobic digester

Other

Not detected

Package

Not detected

All retrieved samples

• SAMN04994458: MIMS Environmental/Metagenome sample from Candidatus Methanomethylicus mesodigestus
• SAMN05003748: MIMS Environmental/Metagenome sample from anaerobic digester metagenome

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Metadata retrieved 9 days ago