BioSample Accession(s)

SAMD00511446, DRS263714

collected by

S.Kawato

collection date

2021-09-06

geo loc name

Japan:Tokyo

isolate

TUMSAT20210906

lat lon

35.62579081 N 139.74790018 E

sample name

Armadillidium vulgare TUMSAT20210906

tissue

whole body

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX380708" alias="DRX380708" center_name="TUMSATGS" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX380708</PRIMARY_ID>
    <SUBMITTER_ID namespace="TUMSATGS">DRX380708</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>GridION sequencing of Armadillidium vulgare TUMSAT20210906</TITLE>
  <STUDY_REF accession="DRP009223" refcenter="TUMSATGS" refname="DRP009223">
    <IDENTIFIERS>
      <PRIMARY_ID>DRP009223</PRIMARY_ID>
      <EXTERNAL_ID label="BioProject ID" namespace="BioProject">PRJDB13888</EXTERNAL_ID>
      <SUBMITTER_ID namespace="TUMSATGS">DRP009223</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="DRS263714" refcenter="TUMSATGS" refname="DRS263714">
      <IDENTIFIERS>
        <PRIMARY_ID>DRS263714</PRIMARY_ID>
        <EXTERNAL_ID label="BioSample ID" namespace="BioSample">SAMD00511446</EXTERNAL_ID>
        <SUBMITTER_ID namespace="TUMSATGS">DRS263714</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME/>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Ligation Sequencing Kit SQK-LSK109</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>9000</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>GridION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>DRS263714</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA014508</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380708&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380708&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX380700" alias="DRX380700" center_name="TUMSATGS" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX380700</PRIMARY_ID>
    <SUBMITTER_ID namespace="TUMSATGS">DRX380700</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>HiSeq 4000 sequencing of Armadillidium vulgare TUMSAT20210906</TITLE>
  <STUDY_REF accession="DRP009223" refcenter="TUMSATGS" refname="DRP009223">
    <IDENTIFIERS>
      <PRIMARY_ID>DRP009223</PRIMARY_ID>
      <EXTERNAL_ID label="BioProject ID" namespace="BioProject">PRJDB13888</EXTERNAL_ID>
      <SUBMITTER_ID namespace="TUMSATGS">DRP009223</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="DRS263714" refcenter="TUMSATGS" refname="DRS263714">
      <IDENTIFIERS>
        <PRIMARY_ID>DRS263714</PRIMARY_ID>
        <EXTERNAL_ID label="BioSample ID" namespace="BioSample">SAMD00511446</EXTERNAL_ID>
        <SUBMITTER_ID namespace="TUMSATGS">DRS263714</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME/>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="450"/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL/>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>150</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>76</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>DRS263714</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA014508</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380700&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380700&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>