Hepatoplasma scabrum

Citation

Formal styling

Hepatoplasma scabrum Kawato et al., 2024

Effective publication

Kawato et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:zkcp7nm0 (validated)

Canonical URL

https://seqco.de/i:23842

Nomenclature

Rank

Species

Syllabication

sca'brum

Etymology

L. neut. adj. scabrum, rough, scabrous

Nomenclatural type

INSDC Nucleotide: AP027133.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Symbiont of terrestrial isopod Porcellio scaber

Classification

Bacteria » Mycoplasmatota » Mollicutes » Mycoplasmatales » Hepatoplasmataceae » Hepatoplasma » Hepatoplasma scabrum

Parent

Hepatoplasma gtdb

Genomics

Accession

INSDC Nucleotide:AP027133.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

25.0 ×

Source

• BioSample: SAMD00511447

Other features

• G+C Content: 24.7%
• Coding Density: 93.37%
• Codon Table: 4
• N50: 606,194 bp
• Contigs: 1
• Largest Contig: 606,194 bp
• Assembly Length: 606,194 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Tree: s__Hepatoplasma scabrum
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Hepatoplasma scabrum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Kawato, Satoshi about 2 years ago

Submitted by

Kawato, Satoshi 10 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 10 months ago

Validated by

Palmer, Marike 10 months ago

Date of priority

2024-03-02 03:22 AM (UTC)