SeqCode Registry
cognitis nomina
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Genomes
sc|0000277
JSON
Genome sc|0000277
Name
Hepatoplasma scabrum
Database
INSDC Nucleotide
Accession
AP027133.1
Genomics
Accession
INSDC Nucleotide:
AP027133.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
25.0 ×
Source
BioSample: SAMD00511447
Other features
G+C Content:
24.7%
Coding Density:
93.37%
Codon Table:
4
N50:
606,194 bp
Contigs:
1
Largest Contig:
606,194 bp
Assembly Length:
606,194 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2021-10-04
Location
Lat Lon:
35.62558752 N 139.75034157 E
Toponym
Geo Loc Name:
Japan:Tokyo
Environment
Isolation Source:
not applicable
Other
Host:
not applicable
Package
Ncbi Submission Package:
Invertebrate.1.0
Biosamplemodel:
Invertebrate
All retrieved samples
SAMD00511447
: Porcellio scaber TUMSAT20211004
Metadata retrieved
7 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMD00511447
×
collection_date
2021-10-04
isolate
TUMSAT20211004
INSDC secondary accession
DRS263715
NCBI submission package
Invertebrate.1.0
organism
Porcellio scaber
host
not applicable
geo_loc_name
Japan:Tokyo
tissue
whole body
collected_by
S.Kawato
lat_lon
35.62558752 N 139.75034157 E
isolation_source
not applicable
sample_name
Porcellio scaber TUMSAT20211004
sample derived_from
SAMD00511447
BioSampleModel
Invertebrate
ENA-FIRST-PUBLIC
2022-11-14
ENA-LAST-UPDATE
2023-11-05
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