collection_date

2021-10-04

isolate

TUMSAT20211004

INSDC secondary accession

DRS263715

NCBI submission package

Invertebrate.1.0

organism

Porcellio scaber

host

not applicable

geo_loc_name

Japan:Tokyo

tissue

whole body

collected_by

S.Kawato

lat_lon

35.62558752 N 139.75034157 E

isolation_source

not applicable

sample_name

Porcellio scaber TUMSAT20211004

BioSampleModel

Invertebrate

ENA-FIRST-PUBLIC

2022-11-14

ENA-LAST-UPDATE

2024-06-02

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX380701" alias="DRX380701" center_name="TUMSATGS" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX380701</PRIMARY_ID>
    <SUBMITTER_ID namespace="TUMSATGS">DRX380701</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>HiSeq 4000 sequencing of Porcellio scaber TUMSAT20211004</TITLE>
  <STUDY_REF accession="DRP009223" refcenter="TUMSATGS" refname="DRP009223">
    <IDENTIFIERS>
      <PRIMARY_ID>DRP009223</PRIMARY_ID>
      <EXTERNAL_ID label="BioProject ID" namespace="BioProject">PRJDB13888</EXTERNAL_ID>
      <SUBMITTER_ID namespace="TUMSATGS">DRP009223</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="DRS263715" refcenter="TUMSATGS" refname="DRS263715">
      <IDENTIFIERS>
        <PRIMARY_ID>DRS263715</PRIMARY_ID>
        <EXTERNAL_ID label="BioSample ID" namespace="BioSample">SAMD00511447</EXTERNAL_ID>
        <SUBMITTER_ID namespace="TUMSATGS">DRS263715</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME/>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="450"/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL/>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>150</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>76</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>DRS263715</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA014508</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380701&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380701&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="DRX380709" alias="DRX380709" center_name="TUMSATGS" broker_name="DDBJ">
  <IDENTIFIERS>
    <PRIMARY_ID>DRX380709</PRIMARY_ID>
    <SUBMITTER_ID namespace="TUMSATGS">DRX380709</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>GridION sequencing of Porcellio scaber TUMSAT20211004</TITLE>
  <STUDY_REF accession="DRP009223" refcenter="TUMSATGS" refname="DRP009223">
    <IDENTIFIERS>
      <PRIMARY_ID>DRP009223</PRIMARY_ID>
      <EXTERNAL_ID label="BioProject ID" namespace="BioProject">PRJDB13888</EXTERNAL_ID>
      <SUBMITTER_ID namespace="TUMSATGS">DRP009223</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="DRS263715" refcenter="TUMSATGS" refname="DRS263715">
      <IDENTIFIERS>
        <PRIMARY_ID>DRS263715</PRIMARY_ID>
        <EXTERNAL_ID label="BioSample ID" namespace="BioSample">SAMD00511447</EXTERNAL_ID>
        <SUBMITTER_ID namespace="TUMSATGS">DRS263715</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME/>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Ligation Sequencing Kit SQK-LSK109</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>6200</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>GridION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>DRS263715</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>DRA014508</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380709&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=DRX380709&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>