Genome sc|0003071


Database

NCBI Assembly

Accession

GCA_003244185.1

Genomics

Accession
NCBI Assembly:GCA_003244185.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.92%
  • Contamination: 1.2%
  • Quality: 86.92
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
34.0 ×
Source
Other features
  • G+C Content: 66.5%
  • Coding Density: 90.03%
  • Codon Table: 11
  • N50: 62,854 bp
  • Contigs: 71
  • Largest Contig: 158,772 bp
  • Assembly Length: 2,960,892 bp
  • Ambiguous Assembly Fraction: 0.0056%
Submitter comments
Completeness estimated with CheckM2
Automated checks
Complete

Last modified 11 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2005-12-13
Location
Lat Lon: 66.3695 S 110.5856 E • 66.369468 S 110.585626 E • 66.369451 S 110.585574 E • 66.369467 S 110.585574 E
Toponym
Geo Loc Name: Antarctica:Robinson Ridge
Environment
Env Material: soil
Sample Type: metagenomic assembly
Env Biome: desert
Isolation Source: pooled data from three different soil samples • soil
Other
Depth: 0-10 cm
Package
Ncbi Submission Package: Microbe.1.0MIMS.me.soil.5.0Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil • Metagenome or environmental
All retrieved samples

Metadata retrieved 11 days ago

Sequencing Experiments

soil metagenome
soil metagenome
soil metagenome


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license