Genome sc|0003085

Genomics

Accession

NCBI Assembly:GCA_003158175.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.0%
• Contamination: 0.69%
• Quality: 90.55

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 29.0%)
• 1 23S rRNA (up to 28.0%)
• tRNAs for 21 amino acids

Sequencing depth

22.7 ×

Source

• BioSample: SAMN08179636
• BioSample: SAMN07125014

Other features

• G+C Content: 61.5%
• Coding Density: 91.72%
• Codon Table: 11
• N50: 121,741 bp
• Contigs: 50
• Largest Contig: 371,851 bp
• Assembly Length: 3,187,183 bp
• Ambiguous Assembly Fraction: 0.015%

Automated checks

Complete

---

Last modified over 1 year ago

Sample Metadata

BioSample entries

• BioSample: SAMN08179636
• BioSample: SAMN07125014

Date

Collection Date: 2012-06-03

Location

Lat Lon: 68° 21′ 12″ N, 19° 2′ 50″ E

View map of sampling locations

Toponym

Geo Loc Name: Sweden: Stordalen Mire • Sweden: Stordalen mire

Environment

Env Material: soil

Sample Type: metagenomic assembly

Env Biome: permafrost

Isolation Source: permafrost active layer soil

Other

Depth: 0.08-0.11

Package

Ncbi Submission Package: Microbe.1.0 • MIMS.me.soil.5.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil

All retrieved samples

• SAMN08179636: MAG WPS2_palsa_1517 from metagenome 20120600_P3M
• SAMN07125014: 20120600_P3M

---

Metadata retrieved over 1 year ago