Genome sc|0003088

Typification

Nomenclatural type of:

• Lustribacter telmatis^Ts

Genomics

Accession

NCBI Assembly:GCA_003164045.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.5%
• Contamination: 3.8%
• Quality: 73.5

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

61.8 ×

Source

• BioSample: SAMN08179990
• BioSample: SAMN07125045

Other features

• G+C Content: 64.13%
• Coding Density: 94.68%
• Codon Table: 11
• N50: 94,456 bp
• Contigs: 102
• Largest Contig: 397,077 bp
• Assembly Length: 4,994,123 bp
• Ambiguous Assembly Fraction: 0.049%

Automated checks

Complete

---

Last modified almost 2 years ago

Sample Metadata

BioSample entries

• BioSample: SAMN08179990
• BioSample: SAMN07125045

Date

Collection Date: 2012-07-20

Location

Lat Lon: 68° 21′ 12″ N, 19° 2′ 51″ E

View map of sampling locations

Toponym

Geo Loc Name: Sweden: Stordalen Mire • Sweden: Stordalen mire

Environment

Env Material: soil

Sample Type: metagenomic assembly

Env Biome: permafrost

Isolation Source: permafrost active layer soil

Other

Depth: 0.11-0.14

Package

Ncbi Submission Package: Microbe.1.0 • MIMS.me.soil.5.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil

All retrieved samples

• SAMN08179990: MAG WPS2_bog_1526 from metagenome 20120700_S1D
• SAMN07125045: 20120700_S1D

---

Metadata retrieved almost 2 years ago