Genome sc|0003254


Database

NCBI Assembly

Accession

GCA_903872075.1

Genomics

Accession
NCBI Assembly:GCA_903872075.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.32%
  • Contamination: 1.62%
  • Quality: 87.22
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 67.43%
  • Coding Density: 91.56%
  • Codon Table: 11
  • N50: 84,525 bp
  • Contigs: 100
  • Largest Contig: 196,088 bp
  • Assembly Length: 4,361,582 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome completeness and contamination was estimated using CheckM v1.1.3 ('lineage_wf').
Automated checks
Complete

Last modified about 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-09-07 • 2018-09-08 • 2018-09-10
Location
Geographic Location Latitude: 64° 9′ 1.4″ N • 64° 7′ 23″ N • 64° 7′ 18″ N
Geographic Location Longitude: 18° 47′ 59″ E • 18° 46′ 50″ E • 18° 47′ 0.8″ E
View map of sampling locations
Toponym
Geographic Location Country And Or Sea: Sweden
Environment
Environment Biome: lentic water body
Environment Feature: lake
Other
Ph: 6.32 • 5.67 • 5.46 • 6.19 • 5.77 • 5.26 • 5.56 • 5.38 • 4.76 • 4.95 • 5.58
Temperature: 14.4 • 10.9 • 8.5 • 5.3 • 13.8 • 10.5 • 6.9 • 4.3 • 4.1 • 4
Geographic Location Depth: 1.3 • 3.5 • 4 • 5 • 0.25 • 3.7 • 6.5 • 7 • 8
Package
Ena Checklist: ERC000024
All retrieved samples

Metadata retrieved about 1 year ago

Sequencing Experiments

Raw reads: microbes_in_stratified_freshwaters_-_lake_Nästjärnen_(711940-164576)_sample_Umea1p4
Raw reads: microbes_in_stratified_freshwaters_-_lake_Nästjärnen_(711940-164576)_sample_Umea1p1
Raw reads: microbes_in_stratified_freshwaters_-_lake_Nästjärnen_(711940-164576)_sample_Umea1p2
Raw reads: microbes_in_stratified_freshwaters_-_lake_Nästjärnen_(711940-164576)_sample_Umea1p3
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea2p1
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea2p2
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea2p3
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p1
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p2
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p3
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p4


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