BioSample Accession(s)

SAMEA6872855, ERS4600419

geographic location (depth)

2.2

environment (material)

water

sulfate

0.295

ferric iron

6.238308363

collection date

2018-07-24

ferrous iron

124.9466678

ammonium

25.2231276678308

geographic location (longitude)

20.361250000000002

nitrate

1.0160487316325

water environmental package

water

sample owner

Gaetan Martin

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

pH

5.19

temperature

9.5

collection data

metagenome

environment (biome)

lentic water body

Lake_code

Ki1

oxygen

-0.1

environment (feature)

lake

geographic location (country and/or sea)

Sweden

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

phosphate

0.252707657252604

Run

R2

dissolved carbon dioxide

1180.202873

geographic location (latitude)

67.92872222222223

scientific_name

lake water metagenome

common name

investigation type

metagenome

nitrite

0

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

323.4829825

iron

131.1849762

region

Kiruna

total dissolved nitrogen

980

dissolved organic carbon

1373.7750505799

site name

Ki1

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4156242" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_Ki1_sample_Ki1-2-2m" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4156242</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_Ki1_sample_Ki1-2-2m</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_Ki1_sample_Ki1-2-2m</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600419">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600419</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872855</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake Ki1 sample Ki1-2-2m</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600419</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2668242</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156242&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156242&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>