Genome sc|0003541

Genomics

Accession

NCBI Assembly:GCA_000012345.1

Cultures

Strain sc|0039687

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.72%
• Contamination: 0.04%
• Quality: 99.52

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

8.2 ×

Source

• BioSample: SAMN02603690

Other features

• G+C Content: 29.7%
• Coding Density: 96.07%
• Codon Table: 11
• N50: 1,308,759 bp
• Contigs: 1
• Largest Contig: 1,308,759 bp
• Assembly Length: 1,308,759 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The original HTCC1062 genome was sequenced in 2003 using ABI technology to a depth of 8.2x. A small number of gaps were closed via PCR (amplified and sequenced bidirectionally), and a small number of low quality areas of the genome were also verified by sequencing PCR products.  Two PIs subsequently manually inspected and curated the genome sequence of HTCC1062 base-by-base.

Automated checks

Complete

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Last modified 10 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN02603690

Date

Not detected

Location

Not detected

Toponym

Not detected

Environment

Not detected

Other

Not detected

Package

Ncbi Submission Package: Generic.1.0

Biosamplemodel: Generic

All retrieved samples

• SAMN02603690: Sample from Candidatus Pelagibacter ubique HTCC1062

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Metadata retrieved 10 months ago