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“Pelagibacter communis”

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Citation

Formal styling
“Pelagibacter communis” corrig. Rappé et al., 2002
Effective publication
Rappé et al., 2002
Corrigendum
Oren et al., 2020 from “Pelagibacter ubique” (sic)
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:91 Copy

Nomenclature

Rank
Species
Syllabication
com.mu'nis
Etymology
L. masc. adj. communis, common
Nomenclatural type
NCBI Assembly: GCA_000012345.1
Reference strain
Strain sc|0038908: HTCC 1062 Lookup StrainInfo

Taxonomy

Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » “Pelagibacterales” » “Pelagibacteraceae” » “Pelagibacter” » “Pelagibacter communis”
Parent
“Pelagibacter” gtdb
Pseudonyms
  • Pelagibacter ubique (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCA_000012345.1
Cultures
Strain sc|0038908
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 0.9%
  • Quality: 91.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 29.68%
  • Coding Density: 96.07%
  • Codon Table: 11
  • N50: 1,308,759 bp
  • Contigs: 1
  • Largest Contig: 1,308,759 bp
  • Assembly Length: 1,308,759 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 8 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Excubia bot, created about 6 years ago

Publications
17

Citation Title
Clifton, Laurino, 2024, Crystal structure of SAR11_0769 from 'Candidatus Pelagibacter ubique' HTCC1062 bound to a co-purified ligand, beta-galactopyranose
Clifton, Laurino, 2023, Crystal structure of the glucose-binding protein SAR11_0769 from ""Candidatus Pelagibacter ubique"" HTCC1062 bound to glucose
Clifton, Laurino, 2023, Crystal structure of the arginine-/lysine-binding protein SAR11_1210 from 'Candidatus Pelagibacter ubique' HTCC1062 bound to arginine
Oren et al., 2020, International Journal of Systematic and Evolutionary Microbiology Lists of names of prokaryotic Candidatus taxa
Corrigendum
Clifton, Jackson, 2017, Crystal structure of the cyclohexadienyl dehydratase-like solute-binding protein SAR11_1068 from Candidatus Pelagibacter ubique
Zhao et al., 2017, Applied and Environmental Microbiology Three-Dimensional Structure of the Ultraoligotrophic Marine Bacterium “Candidatus Pelagibacter ubique”
Smith et al., 2016, mSystems Proteome Remodeling in Response to Sulfur Limitation in “ Candidatus Pelagibacter ubique”
Clifton, Jackson, 2016, Crystal structure of the cyclohexadienyl dehydratase-like solute-binding protein SAR11_1068 from Candidatus Pelagibacter ubique
Smith et al., 2013, mBio Proteomic and Transcriptomic Analyses of “ Candidatus Pelagibacter ubique” Describe the First P II -Independent Response to Nitrogen Limitation in a Free-Living Alphaproteobacterium
Carini et al., 2012, The ISME Journal Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium


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