SeqCode Registry
cognitis nomina
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Genomes
sc|0000356
JSON
Genome sc|0000356
Name
Thalassospirochaeta sargassi
Ts
Database
NCBI Assembly
Accession
GCA_028532855.1
Genomics
Accession
NCBI Assembly:
GCA_028532855.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.0%
Contamination:
2.3%
Quality:
82.5
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 21 amino acids
Sequencing depth
10.0 ×
Source
BioSample: SRS15845323
Other features
G+C Content:
43.93%
Coding Density:
92.98%
Codon Table:
11
N50:
120,296 bp
Contigs:
53
Largest Contig:
535,156 bp
Assembly Length:
3,835,059 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
No 16S rRNA sequence detected in the gene annotation
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2022-02-18
Location
Lat Lon:
9.2876 N 79.3129 E
Toponym
Geo Loc Name:
India:Rameshwaram
Environment
Isolation Source:
sargassum
Other
Not detected
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SRS15845323
: Metagenome or environmental sample from algae metagenome
Metadata retrieved
about 2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS15845323
×
collection_date
2022-02-18
INSDC secondary accession
SRS15845323
NCBI submission package
Metagenome.environmental.1.0
organism
algae metagenome
geo_loc_name
India:Rameshwaram
lat_lon
9.2876 N 79.3129 E
isolation_source
sargassum
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2022-11-23
ENA-LAST-UPDATE
2022-11-25
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