Thalassospirochaeta sargassi^Ts

Citation

Formal styling

Thalassospirochaeta sargassi^Ts Pragya et al., 2024

Effective publication

Pragya et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:jarzruyb (validated)

Canonical URL

https://seqco.de/i:31279

Nomenclature

Rank

Species

Syllabication

sar.gas'si

Etymology

N.L. gen. n. sargassi, of Sargassum, referring to the genus name of the brown algae

Nomenclatural type

NCBI Assembly: GCA_028532855.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

GC content is 43.93. Flagellated and obligate anaerobes. MEP pathway for terpenoid biosynthesis. vanT AMR genes present. 

Classification

Bacteria » Spirochaetota » Spirochaetia » Spirochaetales » Spirochaetaceae » Thalassospirochaeta » Thalassospirochaeta sargassi^Ts

Parent

Thalassospirochaeta

Genomics

Accession

NCBI Assembly:GCA_028532855.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.0%
• Contamination: 2.3%
• Quality: 82.5

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SRS15845323

Other features

• G+C Content: 43.93%
• Coding Density: 92.98%
• Codon Table: 11
• N50: 120,296 bp
• Contigs: 53
• Largest Contig: 535,156 bp
• Assembly Length: 3,835,059 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

No 16S rRNA sequence detected in the gene annotation  

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_028532855.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Thalassospirochaeta sargassi (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chintalapati, Venkata Ramana over 1 year ago

Submitted by

Chintalapati, Venkata Ramana about 1 year ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Rodriguez-R, Luis M about 1 year ago

Validated by

Palmer, Marike 3 months ago

Date of priority

2024-08-01 07:30 AM (UTC)