This sample represents a metagenomic bin from the metagenomic run SRR7058482

ENA-CHECKLIST

ERC000011

ENA-FIRST-PUBLIC

2019-03-13

metagenomic source

marine metagenome

organism

uncultured Planktomarina sp.

ENA-LAST-UPDATE

2019-03-07

assembly quality

Many fragments with little to no review of assembly other than reporting of standard assembly statistics

sample derived from

SRR7058482

completeness score

95.63

contamination score

0.2

scientific_name

uncultured Planktomarina sp.

isolation_source

sea water

collection_date

2016-05-12

INSDC secondary accession

SRS3213927

NCBI submission package

Metagenome.environmental.1.0

organism

marine metagenome

host

not applicable

geo_loc_name

Atlantic Ocean: North Sea, Helgoland

GOLD Ecosystem Classification

Environmental | Aquatic | Marine | Epipelagic | Unclassified

lat_lon

54.1841 N 7.9000 E

isolation_source

subsurface seawater from pelagic zone

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2018-03-22

ENA-LAST-UPDATE

2022-10-21

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3989441" alias="JGI-SRA-93103" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX3989441</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-93103</EXTERNAL_ID>
    <SUBMITTER_ID namespace="">JGI-SRA-93103</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Helgoland_Spring_Bloom_20160512_1</TITLE>
  <STUDY_REF accession="SRP142377">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP142377</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA441614</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS3213927">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS3213927</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN08778202</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>BYGTN</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS3213927</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA694677</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3989441&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3989441&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>