Planktomarina arctica

Citation

Formal styling

Planktomarina arctica Liu et al., 2023 (priority 2024)

Effective publication

Liu et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:8lujptmc (validated)

Canonical URL

https://seqco.de/i:24058

Nomenclature

Rank

Species

Syllabication

arc'ti.ca

Etymology

L. fem. adj. arctica, northern, from the Arctic, corresponding to the origin from where the genome was recovered (Arctic ocean)

Nomenclatural type

NCBI Assembly: GCA_951542345.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The type material, GCA_951542345.1 (MAG C4-4), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Arctic Ocean in 2013 (Biosample accession: SAMEA4397426). The completeness and contamination of the assembly are 93.42% and 0.41%, respectively. Genome assembly contains 14 tRNA genes. The genome size is 2.64 (raw: 2.47 Mbp) with a GC content of 0.48. 

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina arctica

Parent

Planktomarina gtdb

Genomics

Accession

NCBI Assembly:GCA_951542345.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.42%
• Contamination: 0.41%
• Quality: 91.37

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 14 amino acids

Sequencing depth

25.0 ×

Source

• BioSample: SAMEA4397426

Other features

• G+C Content: 48.0%
• Coding Density: 89.26%
• Codon Table: 11
• N50: 37,356 bp
• Contigs: 136
• Largest Contig: 138,966 bp
• Assembly Length: 2,473,689 bp
• Ambiguous Assembly Fraction: 0.15%

Automated checks

Complete

See additional details

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Last modified about 1 year ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_951542345.1
• GTDB Tree: s__Planktomarina arctica
• Wikispecies: Planktomarina arctica
• Wikidata: Q131356830

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered

Almost 3 years ago by Brinkhoff, Thorsten

Submitted

Over 1 year ago by Brinkhoff, Thorsten

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed

Over 1 year ago by Palmer, Marike

Validated

Over 1 year ago by Palmer, Marike

Date of priority

2024-07-30 10:55 AM (UTC)