Genome sc|0000392


Database

NCBI Assembly

Accession

GCA_029962705.1

Genomics

Accession
NCBI Assembly:GCA_029962705.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.16%
  • Contamination: 1.77%
  • Quality: 85.31
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
21.3 ×
Source
Other features
  • G+C Content: 48.0%
  • Coding Density: 89.08%
  • Codon Table: 11
  • N50: 24,761 bp
  • Contigs: 213
  • Largest Contig: 115,824 bp
  • Assembly Length: 2,684,900 bp
  • Ambiguous Assembly Fraction: 0.11%
Automated checks
Complete

Last modified 10 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-03-25
Location
Geographic Location Latitude: -61,24361
Geographic Location Longitude: -57,07361
Toponym
Geographic Location Country And Or Sea: Southern Ocean
Environment
Environment Biome: ocean biome [ENVO:01000048]
Environment Feature: microbial feature [ENVO:01000007]
Other
Geographic Location Depth: 20
Package
Ena Checklist: ERC000024
All retrieved samples

Metadata retrieved 10 days ago

Sequencing Experiments

Illumina HiSeq 2500 paired end sequencing


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license