Planktomarina antarctica

Citation

Formal styling

Planktomarina antarctica Liu et al., 2023 (priority 2024)

Effective publication

Liu et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:8lujptmc (validated)

Canonical URL

https://seqco.de/i:24060 CopyCopied to the clipboard

Nomenclature

Rank

Species

Syllabication

ant.arc'ti.ca

Etymology

L. fem. adj. antarctica, of the Antarctic, corresponding to the origin from where the genome was recovered (Antarctic ocean)

Nomenclatural type

NCBI Assembly: GCA_029962705.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The type material, GCA_029962705.1 (MAG C5-3), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Southern Ocean in 2012 (Biosample accession: SAMEA5958381). The assembly genome is of high quality with 94.16% completeness and 1.77 % contamination and contains 16 tRNA genes. The genome size is 2.80 Mbp (raw: 2.68 Mbp) with a GC content of 0.48. 

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina antarctica

Parent

Planktomarina

Genomics

Accession

NCBI Assembly:GCA_029962705.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.16%
• Contamination: 1.77%
• Quality: 85.31

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 18 amino acids

Sequencing depth

21.3 ×

Source

• BioSample: SAMEA5958381

Other features

• G+C Content: 48.0%
• Coding Density: 89.08%
• Codon Table: 11
• N50: 24,761 bp
• Contigs: 213
• Largest Contig: 115,824 bp
• Assembly Length: 2,684,900 bp
• Ambiguous Assembly Fraction: 0.11%

Automated checks

Complete

See additional details

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Last modified 5 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_029962705.1
• Wikispecies: Planktomarina antarctica

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 9 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Brinkhoff, Thorsten, created about 2 years ago

Submitted by

Brinkhoff, Thorsten 9 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 9 months ago

Validated by

Palmer, Marike 9 months ago

Date of priority

2024-07-30 10:55 AM (UTC)