Planktomarina antarctica

Citation

Formal styling

Planktomarina antarctica Liu et al., 2023 (valid 2024)

Effective publication

Liu et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:8lujptmc (validated)

Canonical URL

https://seqco.de/i:24060

Nomenclature

Rank

Species

Syllabication

ant.arc'ti.ca

Etymology

L. fem. adj. antarctica, of the Antarctic, corresponding to the origin from where the genome was recovered (Antarctic ocean)

Nomenclatural type

NCBI Assembly: GCA_029962705.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The type material, GCA_029962705.1 (MAG C5-3), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Southern Ocean in 2012 (Biosample accession: SAMEA5958381). The assembly genome is of high quality with 94.16% completeness and 1.77 % contamination and contains 16 tRNA genes. The genome size is 2.80 Mbp (raw: 2.68 Mbp) with a GC content of 0.48. 

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina antarctica

Parent

Planktomarina

Genomics

Accession

NCBI Assembly:GCA_029962705.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.16%
• Contamination: 1.77%
• Quality: 85.31

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 18 amino acids

Sequencing depth

21.3 ×

Source

• BioSample: SAMEA5958381

Other features

• G+C Content: 48.0%
• Coding Density: 89.08%
• Codon Table: 11
• N50: 24,761 bp
• Contigs: 213
• Largest Contig: 115,824 bp
• Assembly Length: 2,684,900 bp
• Ambiguous Assembly Fraction: 0.11%

Automated checks

Complete

See additional details

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Last modified 10 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_029962705.1
• Wikispecies: Planktomarina antarctica (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 4 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Brinkhoff, Thorsten over 1 year ago

Submitted by

Brinkhoff, Thorsten 4 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 4 months ago

Validated by

Palmer, Marike 4 months ago

Date of priority

2024-07-30 10:55 AM (UTC)