Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN40457758, ERS18587366

collection_date

2022-10

organism

candidate division WOR-3 bacterium

env_broad_scale

missing

metagenomic

1

environmental-sample

1

env_local_scale

thermal stream

metagenome-source

sediment metagenome

isolate

Uz-U4-05

NCBI submission package

MIMAG.sediment.6.0

depth

missing

elev

missing

geo_loc_name

Uzbekistan: Navoiy Region

env_medium

sediment

lat_lon

40.16226 N 66.01274 E

isolation_source

sediment of a thermal stream

sample-type

metagenomic assembly

sample derived-from

SAMN40457753

BioSampleModel

MIMAG.sediment

ENA-FIRST-PUBLIC

2024-03-18

ENA-LAST-UPDATE

2024-03-18

BioSample Accession(s)

SAMN40457753, SRS24901266

collection_date

2022-10

INSDC secondary accession

SRS24901266

NCBI submission package

Metagenome.environmental.1.0

organism

sediment metagenome

geo_loc_name

Uzbekistan: Navoiy Region

lat_lon

40.16226 N 66.01274 E

isolation_source

sediment of a thermal stream

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2024-03-18

ENA-LAST-UPDATE

2025-04-30

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX28630248" alias="Uz-U4" center_name="SUB15292943" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX28630248</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15292943">Uz-U4</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>WGS shotgun metagenome of sediments of the hot water stream formed by discharge of artesian groundwater located in Navoiy Region, Uzbekistan</TITLE>
  <STUDY_REF accession="SRP582400">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP582400</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1088082</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>MGIEasy Fast PCR-FREE FS Library Prep Set (MGI, China)</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS24901266">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS24901266</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN40457753</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Uz-U4</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <BGISEQ>
      <INSTRUMENT_MODEL>BGISEQ-500</INSTRUMENT_MODEL>
    </BGISEQ>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS24901266</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2121514</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX28630248&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX28630248&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>