Tepidihabitans asiaticusTs


Citation

Formal styling
Tepidihabitans asiaticusTs Slobodkina et al., 2025
Effective publication
Slobodkina et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hc4xldeb (validated)
Canonical URL
https://seqco.de/i:51333

Nomenclature

Rank
Species
Syllabication
a.si.a'ti.cus
Etymology
N.L. masc. adj. asiaticus, pertaining to Asia
Nomenclatural type
INSDC Nucleotide: JBBFKS000000000.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Tepidihabitans asiaticus U4-05 is presented by high-quality draft metagenome-assembled genome (MAG) of a member of the Hydrothermota (p__WOR-3) phylum, that was assembled from thermophilic microbial community from a hot stream formed by discharge of thermal artesian groundwater in Navoiy region (Republic of Uzbekistan). This microorganism represents 5% of the microbial community developing in the sediments under the ginger mat at a temperature of 54°C.
The results of the bac120-based phylogenomic analysis confirmed that the U4-05 is a part of candidate division WOR-3 ("Candidatus Hydrothermota" according to LPSN) and, along with many MAGs, forms a separate phylogenetic cluster at the class level, which is designated as c__WOR-3 according to GTDB (Fig). This cluster is sister to "Candidatus Hydrothermia", to which the recently described pure culture sy37 (Mori et al., 2025), “Candidatus Hydrothermus pacificus” (Chuvochina et al. 2019), "Candidatus Caldipriscus" and "Candidatus Thermoproauctor" (Colman et al., 2016) belong. Analysis of the distribution of U4-05-related phylotypes shows that they are found in hot springs and thermophilic bioreactors, can occupy a significant part of the community (6-8%) and prefer moderately thermophilic conditions, neutral pH and abundance of complex organic matter.
The MAG has genes for the complete Embden-Meyerhof-Parnas pathway, non-oxidative branch of the pentose-phosphate pathway and the fatty acids β-oxidation. Has only scant genes related to motility. Genes encoding most components of the tricarboxylic acid cycle are absent. Has no genes for CO2 fixation. Genes encoding components of the aerobic respiratory chain, and the F₀F₁-type H⁺-transporting ATP synthase are absent. The genome encodes the Rnf electron-transporting complex and subunits of a V-type ATP synthase. On the basis of genome analysis, U4-05 is predicted to be an anaerobic heterotrophic bacterium with fermentative metabolism. The presence of the Rnf electron-transporting complex and subunits of a V-type ATP synthase may support ion gradient generation and ATP synthesis in the absence of a conventional electron transport chain.

Classification
Bacteria » “Hydrothermota” » Tepidihabitantia » Tepidihabitantales » Tepidihabitantaceae » Tepidihabitans » Tepidihabitans asiaticusTs
Parent
Tepidihabitans

Genomics

Accession
INSDC Nucleotide:JBBFKS000000000.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.18%
  • Contamination: 0.15%
  • Quality: 97.43
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
373.0 ×
Source
Other features
  • G+C Content: 51.25%
  • Coding Density: 92.97%
  • Codon Table: 11
  • N50: 1,430,661 bp
  • Contigs: 3
  • Largest Contig: 1,430,661 bp
  • Assembly Length: 1,875,845 bp
  • Ambiguous Assembly Fraction: 0.0053%
Submitter comments
Completeness and contamination were assessed by CheckM2 (Chklovski et al., 2023). 
Annotation of the genome was done by PGAP (Tatusova et al., 2016)
Automated checks
Complete

Last modified 4 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
4 months ago by Merkel, Alexander
Submitted
4 months ago by Merkel, Alexander
Curators
Endorsed
4 months ago by Rodriguez-R, Luis M
Validated
3 months ago by Rodriguez-R, Luis M
Date of priority
2025-09-02 09:19 AM (UTC)

Publications
1

Citation Title
Slobodkina et al., 2025, Systematic and Applied Microbiology Taxonomic and metabolic diversity of microbial communities in a thermal water stream in Uzbekistan and proposal of two new classes of uncultivated bacteria, Desulfocorpusculia class. nov. and Tepidihabitantia class. nov., named following the rules of SeqCode
Effective publication



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