JSON

Genome sc|0000398

Name

Pantoea gossypiicola

Database

NCBI Assembly

Accession

GCF_008632075.1

Genomics

Accession
NCBI Assembly:GCF_008632075.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.25%
  • Quality: 98.75
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
201.28 ×
Source
Other features
  • G+C Content: 54.75%
  • Coding Density: 86.55%
  • Codon Table: 11
  • N50: 268,461 bp
  • Contigs: 47
  • Largest Contig: 498,612 bp
  • Assembly Length: 4,936,004 bp
  • Ambiguous Assembly Fraction: 8.1e-05%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Last modified 6 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-07-15
Location
Not detected
Toponym
Geo Loc Name: Pakistan: Bahwalpur, Punjab
Environment
Sample Type: Bacterial Culture
Isolation Source: leaves
Other
Host: Gossypium hirsutum
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 6 days ago

Sequencing Experiments

Pakistan Pantoea Collection B_8


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license