Pantoea haifensis


Citation

Formal styling
Pantoea haifensis Crosby et al., 2023
Effective publication
Crosby et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xfaladud (validated)
Cannonical URL
https://seqco.de/i:31360

Nomenclature

Rank
Species
Syllabication
hai.fen'sis
Etymology
N.L. fem. adj. haifensis, of Haifa, Israel, where this organism was isolated from
Nomenclatural type
NCBI Assembly: GCA_018842655.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species currently consists of the genome of a single strain, EnvH, which was isolated from asphalt in Haifa, Israel. The pairwise ANI values between this species and the two closest relatives, GCF_018842675.1 and GCF_014946725.1, are below 80% confirming that this species is distinct from those with which it shares a most recent common ancestor.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea haifensis
Parent
Pantoea ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_018842655.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.75%
  • Contamination: 1.25%
  • Quality: 90.5
Ribosomal and transfer RNA genes
  • 7 16S rRNAs (up to 100.0%)
  • 7 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
73.0 ×
Source
Other features
  • G+C Content: 51.69%
  • Coding Density: 85.04%
  • Codon Table: 11
  • N50: 3,740,753 bp
  • Contigs: 10
  • Largest Contig: 3,740,753 bp
  • Assembly Length: 4,407,444 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 1 year ago
Submitted by
Palmer, Marike 11 months ago
Curators
Endorsed by
Chuvochina, Maria 11 months ago
Validated by
Rodriguez-R, Luis M 6 months ago
Date of priority
2023-11-15 01:31 PM (UTC)

Publications
1

Citation Title
Crosby et al., 2023, Frontiers in Microbiology Genomic delineation and description of species and within-species lineages in the genus Pantoea
Effective publication



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