Pantoea haifensis

Citation

Formal styling

Pantoea haifensis Crosby et al., 2023

Effective publication

Crosby et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xfaladud (validated)

Canonical URL

https://seqco.de/i:31360

Nomenclature

Rank

Species

Syllabication

hai.fen'sis

Etymology

N.L. fem. adj. haifensis, of Haifa, Israel, where this organism was isolated from

Nomenclatural type

NCBI Assembly: GCA_018842655.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species currently consists of the genome of a single strain, EnvH, which was isolated from asphalt in Haifa, Israel. The pairwise ANI values between this species and the two closest relatives, GCF_018842675.1 and GCF_014946725.1, are below 80% confirming that this species is distinct from those with which it shares a most recent common ancestor.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea haifensis

Parent

Pantoea ncbigtdb

Genomics

Accession

NCBI Assembly:GCA_018842655.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 96.75%
• Contamination: 1.25%
• Quality: 90.5

Ribosomal and transfer RNA genes

• 7 16S rRNAs (up to 100.0%)
• 7 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

73.0 ×

Source

• BioSample: SAMN18876905

Other features

• G+C Content: 51.69%
• Coding Density: 85.04%
• Codon Table: 11
• N50: 3,740,753 bp
• Contigs: 10
• Largest Contig: 3,740,753 bp
• Assembly Length: 4,407,444 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• NCBI Taxonomy: 2831035
• GTDB Genome: GCA_018842655.1
• GTDB Tree: s__Pantoea haifensis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Pantoea haifensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 11 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike over 1 year ago

Submitted by

Palmer, Marike over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Rodriguez-R, Luis M about 1 year ago

Date of priority

2023-11-15 01:31 PM (UTC)