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Pantoea formicae

Citation

Formal styling
Pantoea formicae Crosby et al., 2023
Effective publication
Crosby et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xfaladud (validated)
Canonical URL
https://seqco.de/i:31367

Nomenclature

Rank
Species
Syllabication
for'mi.cae
Etymology
N.L. gen. n. formicae, of an ant
Nomenclatural type
NCBI Assembly: GCF_011752625.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is represented by the genome of a single strain, Acro-805, isolated from the fungal garden of an ant belonging to the genus Acromyrmex, in Brazil. It shares an MRCA with the type strain of P. rwandensis LMG 26275T. The pairwise ANI between the two strains is approximately 92% supporting the designation of this species as distinct and novel.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea formicae
Parent
Pantoea gtdb

Genomics

Accession
NCBI Assembly:GCF_011752625.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.44%
  • Quality: 92.8
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 62.0%)
  • 1 23S rRNA (up to 78.0%)
  • tRNAs for 20 amino acids
Sequencing depth
113.0 ×
Source
Other features
  • G+C Content: 52.91%
  • Coding Density: 86.98%
  • Codon Table: 11
  • N50: 695,466 bp
  • Contigs: 62
  • Largest Contig: 968,654 bp
  • Assembly Length: 5,899,141 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
See additional details
Last modified 11 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Palmer, Marike
Submitted
Over 2 years ago by Palmer, Marike
Curators
Endorsed
Over 2 years ago by Chuvochina, Maria
Validated
Almost 2 years ago by Rodriguez-R, Luis M
Date of priority
2023-11-15 01:31 PM (UTC)

Publications
1

Citation Title
Crosby et al., 2023, Frontiers in Microbiology Genomic delineation and description of species and within-species lineages in the genus Pantoea
Effective publication


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