Pantoea formicae

Citation

Formal styling

Pantoea formicae Crosby et al., 2023

Effective publication

Crosby et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xfaladud (validated)

Canonical URL

https://seqco.de/i:31367

Nomenclature

Rank

Species

Syllabication

for'mi.cae

Etymology

N.L. gen. n. formicae, of an ant

Nomenclatural type

NCBI Assembly: GCF_011752625.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species is represented by the genome of a single strain, Acro-805, isolated from the fungal garden of an ant belonging to the genus Acromyrmex, in Brazil. It shares an MRCA with the type strain of P. rwandensis LMG 26275^T. The pairwise ANI between the two strains is approximately 92% supporting the designation of this species as distinct and novel.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea formicae

Parent

Pantoea ncbigtdb

Genomics

Accession

NCBI Assembly:GCF_011752625.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 1.44%
• Quality: 92.8

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 62.0%)
• 1 23S rRNA (up to 78.0%)
• tRNAs for 20 amino acids

Sequencing depth

113.0 ×

Source

• SRA: SRX6864693

Other features

• G+C Content: 52.91%
• Coding Density: 86.98%
• Codon Table: 11
• N50: 695,466 bp
• Contigs: 62
• Largest Contig: 968,654 bp
• Assembly Length: 5,899,141 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• NCBI Taxonomy: 2608355
• GTDB Genome: GCF_011752625.1
• GTDB Tree: s__Pantoea formicae
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Pantoea formicae (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 11 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike over 1 year ago

Submitted by

Palmer, Marike over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Rodriguez-R, Luis M about 1 year ago

Date of priority

2023-11-15 01:31 PM (UTC)