JSON

Genome sc|0000402

Name

Pantoea bituminis

Database

NCBI Assembly

Accession

GCF_018842675.1

Genomics

Accession
NCBI Assembly:GCF_018842675.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.81%
  • Contamination: 0.19%
  • Quality: 97.86
Ribosomal and transfer RNA genes
  • 7 16S rRNAs (up to 100.0%)
  • 7 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
144.0 ×
Source
Other features
  • G+C Content: 51.15%
  • Coding Density: 84.71%
  • Codon Table: 11
  • N50: 4,008,183 bp
  • Contigs: 5
  • Largest Contig: 4,008,183 bp
  • Assembly Length: 5,222,323 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Last modified 10 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-03-10
Location
Not detected
Toponym
Geo Loc Name: Israel: Jerusalem
Environment
Sample Type: colony
Isolation Source: asphalt
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 10 days ago

Sequencing Experiments

Genome Sequencing of Pantoea sp. EnvD


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