SeqCode Registry
cognitis nomina
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Genomes
sc|0000402
JSON
Genome sc|0000402
Name
Pantoea bituminis
Database
NCBI Assembly
Accession
GCF_018842675.1
Genomics
Accession
NCBI Assembly:
GCF_018842675.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.81%
Contamination:
0.19%
Quality:
97.86
Ribosomal and transfer RNA genes
7 16S rRNAs (up to 100.0%)
7 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
144.0 ×
Source
BioSample: SAMN18876904
Other features
G+C Content:
51.15%
Coding Density:
84.71%
Codon Table:
11
N50:
4,008,183 bp
Contigs:
5
Largest Contig:
4,008,183 bp
Assembly Length:
5,222,323 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2019-03-10
Location
Not detected
Toponym
Geo Loc Name:
Israel: Jerusalem
Environment
Sample Type:
colony
Isolation Source:
asphalt
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN18876904
: Microbe sample from Pantoea sp. EnvD
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN18876904
×
strain
EnvD
INSDC secondary accession
SRS8798330
NCBI submission package
Microbe.1.0
organism
Pantoea sp. EnvD
collection date
2019-03-10
isolation source
asphalt
geo loc name
Israel: Jerusalem
sample type
colony
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2021-04-27
ENA-LAST-UPDATE
2021-04-29
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