Genome sc|0000414


Database

NCBI Assembly

Accession

GCA_002299595.1

Genomics

Accession
NCBI Assembly:GCA_002299595.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.16%
  • Contamination: 1.1%
  • Quality: 90.66
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
33.53 ×
Source
Other features
  • G+C Content: 57.15%
  • Coding Density: 87.13%
  • Codon Table: 11
  • N50: 32,523 bp
  • Contigs: 191
  • Largest Contig: 114,927 bp
  • Assembly Length: 3,950,619 bp
  • Ambiguous Assembly Fraction: 0.057%
Submitter comments
Quality assessed with CheckM 1 v. 0.18 (completeness = 96.16%; contamination = 1.1%) with the Enterobacteriaceae marker set consisting of 876 markers, and CheckM 2 v. 0.1.3 (completeness = 85.91%; contamination = 0.89%) with a specific neural network model. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013-07-15
Location
Lat Lon: 40.67 N 73.88 W
Toponym
Geo Loc Name: USA:New York City
Environment
Env Material: metal/plastic
Sample Type: metagenomic assembly
Env Biome: city
Isolation Source: metal/plastic
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples

Metadata retrieved 5 months ago


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