Genome sc|0000440


Database

NCBI Assembly

Accession

GCA_002011125.1

Genomics

Accession
NCBI Assembly:GCA_002011125.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.13%
  • Contamination: 1.8%
  • Quality: 89.13
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
116.9 ×
Source
Other features
  • G+C Content: 39.14%
  • Coding Density: 92.14%
  • Codon Table: 11
  • N50: 149,032 bp
  • Contigs: 22
  • Largest Contig: 364,381 bp
  • Assembly Length: 2,062,134 bp
  • Ambiguous Assembly Fraction: 0.00058%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011-07-12
Location
Lat Lon: 47.76 N 127.76 W
Toponym
Geo Loc Name: Pacific Ocean
Environment
Env Material: water
Sample Type: metagenomic assembly
Env Biome: hydrothermal fluid
Isolation Source: basaltic crustal fluids
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Hydrothermal vents | Diffuse flow
Other
Depth: 454
Package
Ncbi Submission Package: Microbe.1.0MIMARKS.survey.sediment.6.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.sediment
All retrieved samples

Metadata retrieved 5 months ago


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