Hydrothermarchaeum profundi^Ts

Citation

Formal styling

Hydrothermarchaeum profundi^Ts Chuvochina et al., 2019 (valid 2023)

Effective publication

Chuvochina et al., 2019

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:ivphtsqc (validated)

Canonical URL

https://seqco.de/i:31421

Nomenclature

Rank

Species

Syllabication

pro.fun'di

Etymology

L. gen. n. profundi, of/from the depth of the sea

Nomenclatural type

NCBI Assembly: GCA_002011125.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The organism was formerly identified as JdFR-18 in the hydrothermal fluid from Juan de Fuca Ridge by Jungbluth et al. (2017) Sci. Data 4, 170037. doi: 10.1038/sdata.2017.37. An annotation of the genome is provided in the same original study. Metabolic capabilities inferred from the genome reveal a thermophilic carboxydotroph capable of chemotaxis and motility. The organism appears to capable of anaerobic respiration with sulfate serving as a terminal electron acceptor.

Classification

Archaea » “Hydrothermarchaeota” » Hydrothermarchaeia » Hydrothermarchaeales » Hydrothermarchaeaceae » Hydrothermarchaeum » Hydrothermarchaeum profundi^Ts

Parent

Hydrothermarchaeum gtdb

Genomics

Accession

NCBI Assembly:GCA_002011125.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.13%
• Contamination: 1.8%
• Quality: 89.13

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

116.9 ×

Source

• BioSample: SAMN06226335
• BioSample: SAMN03166137

Other features

• G+C Content: 39.14%
• Coding Density: 92.14%
• Codon Table: 11
• N50: 149,032 bp
• Contigs: 22
• Largest Contig: 364,381 bp
• Assembly Length: 2,062,134 bp
• Ambiguous Assembly Fraction: 0.00058%

Automated checks

Complete

See additional details

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Last modified 10 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_002011125.1
• GTDB Tree: s__Hydrothermarchaeum profundi
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Hydrothermarchaeum profundi (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria over 1 year ago

Submitted by

Chuvochina, Maria over 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike about 1 year ago

Validated by

Palmer, Marike about 1 year ago

Date of priority

2023-08-22 04:55 AM (UTC)