SeqCode Registry
cognitis nomina
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Genomes
sc|0000454
JSON
Genome sc|0000454
Name
Pseudothioglobus singularis
Ts
Database
NCBI Assembly
Accession
GCA_001281385.1
Genomics
Accession
NCBI Assembly:
GCA_001281385.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
98.68%
Contamination:
0.0%
Quality:
98.68
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
2000.0 ×
Source
BioSample: SAMN04054243
Other features
G+C Content:
37.44%
Coding Density:
94.06%
Codon Table:
11
N50:
1,714,148 bp
Contigs:
1
Largest Contig:
1,714,148 bp
Assembly Length:
1,714,148 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
about 1 month ago
Sample Metadata
BioSample entries
BioSample: SAMN04054243
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
Generic.1.0
Biosamplemodel:
Generic
All retrieved samples
SAMN04054243
: Sample from Candidatus Pseudothioglobus singularis PS1
Metadata retrieved
about 1 month ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN04054243
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN04054243
strain
PS1
type-material
reference material of Candidatus Thioglobus singularis
NCBI submission package
Generic.1.0
organism
Candidatus Pseudothioglobus singularis PS1
common name
gb|CP006911
BioSampleModel
Generic
ENA-FIRST-PUBLIC
2015-09-11
ENA-LAST-UPDATE
2023-02-12
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