Pseudothioglobus singularis^Ts

Citation

Formal styling

Pseudothioglobus singularis^Ts van Vliet et al., 2021 (valid 2024)

Effective publication

van Vliet et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:a7urrcua (validated)

Canonical URL

https://seqco.de/i:31963

Nomenclature

Rank

Species

Syllabication

sin.gu.la'ris

Etymology

L. masc. adj. singularis, alone, singular

Nomenclatural type

NCBI Assembly: GCA_001281385.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The description is the same as given originally by Marshall, Morris, 2013 since van Vliet et al. (2021) proposed new genus name based on the same type species:

We propose the provisional taxonomic assignment ‘Candidatus: Thioglobus singularis’, alluding to the clade’s known role in sulfur oxidation and the Isolate’s planktonic lifestyle. Thioglobus gen. nov. Thioglobus singularis sp. nov. Etymology. thios (Gr. noun): sulfur, globus (L. masc. noun): ball, sphere, globe. Singularis (L. adj.): alone, singular. The Genus name alludes to the clade’s ability to oxidize sulfur and to the sulfur globules found on the outside of the cells. The species name alludes to the fact that this is a free-living member of the clade, rather than a symbiont. Locality: surface waters in Puget Sound. Diagnosis: a small mesophilic sulfur oxidizer from the gamma proteobacteria.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » “Gammaproteobacteria_incertae_sedis” » Pseudothioglobaceae » Pseudothioglobus » Pseudothioglobus singularis^Ts

Parent

Pseudothioglobus gtdb assigned in Marshall, Morris, 2013

Genomics

Accession

NCBI Assembly:GCA_001281385.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.68%
• Contamination: 0.0%
• Quality: 98.68

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

2000.0 ×

Source

• BioSample: SAMN04054243

Other features

• G+C Content: 37.44%
• Coding Density: 94.06%
• Codon Table: 11
• N50: 1,714,148 bp
• Contigs: 1
• Largest Contig: 1,714,148 bp
• Assembly Length: 1,714,148 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_001281385.1
• GTDB Tree: s__Pseudothioglobus singularis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Pseudothioglobus singularis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria over 1 year ago

Submitted by

Chuvochina, Maria 9 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 8 months ago

Date of priority

2024-03-28 05:31 AM (UTC)